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| Registros recuperados : 46 | |
| 2. |  | IVAMOTO, S. T.; REIS JUNIOR, O.; CARAZZOLLE, M. F.; DOMINGUES, D. S.; PEREIRA, L. F. P. Transcriptoma de frutos de Coffea arabica L. ao longo do seu desenvolvimento inicial. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 8., 2013, Salvador. Sustentabilidade e inclusão Social. Brasília, DF: Embrapa Café, 2013.| Biblioteca(s): Embrapa Café. |
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| 4. | | PASCHOAL, A. R.; FERNANDES, E. D. M.; SILVA, J. C.; LOPES, F. M.; PEREIRA, L. F. P.; DOMINGUES, D. S. CoffeebEST: an integrated resource for Coffea spp expressed sequence tags. Genetics and Molecular Research, v. 13, n. 4, p. 10913-10920, 2014.| Biblioteca(s): Embrapa Café. |
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| 5. | | IVAMOTO, S. T.; CELEDÓN, J. M.; YUEN, M. M. S.; DOMINGUES, D. S.; PEREIRA, L. F. P.; BOHLMANN, J. Biochemical and molecular analysis of Coffea arabica to identify candidate genes related to diterpenes biosynthesis. In: INTERNATIONAL MEETING ON BIOSYNTHESIS, FUNCTIONS AND SYNTHETIC BIOLOGY OF ISOPRENOIDS, 12., 2015, Vancouver, Canada. Porter... Vancouver, Canada: University of British Columbia, 2015.| Biblioteca(s): Embrapa Café. |
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| 6. | | DOMINGUES, D. S.; FARRO, A. P. C.; COSCRATO, V. E.; MELLO, E. J. de; ODA, S.; MARINO, C. L. Identificação de marcadores RAPD e SCAR relacionados ao caractere florescimento precoce em Eucalyptus grandis. Ciência Florestal, Santa Maria, v. 16, n. 3/4, p. 251-260, set. 2006.| Biblioteca(s): Embrapa Florestas. |
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| 7. | | FERREIRA, R. V.; ANDRADE, G. A.; CHARMETANT, P.; LEROY, T.; DOMINGUES, D. S.; PEREIRA, L. F. P. Identificação de novos acessos de Coffea Arábica introduzidos na coleção da Etiópia do IAPAR. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 9., 2015, Curitiba. Anais... Brasília, DF: Embrapa Café, 2015.| Biblioteca(s): Embrapa Café. |
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| 8. | | PEREIRA, L. F. P.; YANAGUI, K.; FERREIRA, L. P.; DOMINGUES, D. S.; VIEIRA, L. G. E.; POT, D. Analysis Of Nucleotide Diversity In Coffea spp. In: INTERNATIONAL PLANT & ANIMAL GENOMES CONFERENCE, 19, 2011, San Diego, CA.| Biblioteca(s): Embrapa Café. |
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| 10. | | IVAMOTO, S. T.; POT, D.; LANNES, S. D.; DOMINGUES, D. S.; VIEIRA, L. G. E.; PEREIRA, L. F. P. Diversidade nucleotídica de genes envolvidos na biossíntese de ácidos clorogênicos de cafeeiros. Coffee Science, Lavras, v. 8, n. 2, p. 148-156, abr./jun. 2013.| Biblioteca(s): Embrapa Café. |
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| 11. | | IVAMOTO, S. T.; CELEDÓN, J. M.; YUEN, M. M. S.; DOMINGUES, D. S.; PEREIRA, L. F. P.; BOHLMANN, J. Molecular and metabolite analyses of Coffea arabica L. fruits to identify candidate genes for diterpene biosynthesis. In: INTERNATIONAL CONGRESS OF PLANT MOLECULAR BIOLOGY, 11., 2015, Iguassu Falls, Brazil. Summaries... Rockville, USA: American Society of Plant Biologists, 2015.| Biblioteca(s): Embrapa Café. |
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| 13. | | DOMINGUES, D. S.; MEDA, A. R.; SANTOS, T. B.; VESPERO, E. B.; SITTA, R. B.; PEREIRA, L. F. P.; VIEIRA, L. G. E. Coffea nutriome: minding the gap among genomics, biotechnology and fertilization practices. In.: CONGRESSO BRASILEIRO DE GENÉTICA, 56., 2010, Guarujá.| Biblioteca(s): Embrapa Café; Embrapa Unidades Centrais. |
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| 14. | | IVAMOTO-SUZUKI, S. T.; CELEDÓN, J. M.; YUEN, M. M. S.; KITZBERGER, C. S. G.; DOMINGUES, D. S.; BOHLMANN, J.; PEREIRA, L. F. P. Functional characterization of ent-copalyl diphosphate synthase and kaurene synthase genes from coffea arábica L. Journal of Agricultural and Food Chemistry, v. 71, n. 42, p. 15863-15873, 2023.| Biblioteca(s): Embrapa Café. |
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| 15. | | SOUZA, S. G. H. de; SANTOS, T. B. dos; DOMINGUES, D. S.; BERNADAC, A.; BOUZAYEN, M.; PEREIRA, L. F. P.; DEGRASSI, G.; CARPENTIERI-PIPOLO, V. Identification, structure analyses and expression pattern of the ERF transcription factor family in coffea arabica. Journal of Botanical Research, v. 3, n.1, Jan. 2021.| Biblioteca(s): Embrapa Café; Embrapa Trigo. |
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| 16. | | SILVA, B. S. R. da; CAÇÃO, S. B.; IVAMOTO, S. T.; SILVA, J. C.; DOMINGUES, D. S.; PEREIRA, L. F. P. Identificação e caracterização de microssatélites de Coffea arabica a partir de dados de sequenciamento de RNA e de BACS. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 8., 2013, Salvador. Sustentabilidade e inclusão Social. Brasília, DF: Embrapa Café, 2013.| Biblioteca(s): Embrapa Café. |
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| 17. | | CARVALHO, K. de; PETKOWICZ, C. L. O.; NAGASHIMA, G. T.; BESPALHOK FILHO, J. C.; VIEIRA, L. G. E.; PEREIRA, L. F. P.; DOMINGUES, D. S. Homeologous genes involved in mannitol synthesis reveal unequal contributions in response to abiotic stress in Coffea arábica. Molecular Genetics and Genomics, v. 289, n. 5, p. 951-963, 2014.| Biblioteca(s): Embrapa Café. |
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| 18. | | IVAMOTO, S. T.; POT, D.; FERREIRA, L. P.; ALVES, L. C.; DOMINGUES, D. S.; VIEIRA, L. G. E.; PEREIRA, L. F. P. Análise in silico da expressão gênica de citocromo p450 relacionada ao metabolismo de diterpenos em Coffea. In.: CONGRESSO BRASILEIRO DE GENÉTICA, 56., 2010, Guarujá.| Biblioteca(s): Embrapa Café; Embrapa Unidades Centrais. |
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| 19. | | SANTOS, T. B. dos; SILVA, J. C.; SOARES, J. D. M.; BABA, V. Y.; PEREIRA, L. F. P.; VIEIRA, L. G. E.; DOMINGUES, D. S. Expressão gênica em larga escala de raizes de Coffea arabica L. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 9., 2015, Curitiba. Anais... Brasília, DF: Embrapa Café, 2015.| Biblioteca(s): Embrapa Café. |
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| 20. | | SANT'ANA, G. C.; POT, D.; IVAMOTO, S. T.; DOMINGUES, D. S.; SCHOLZ, M. B. B.; LEROY, T.; PEREIRA, L. F. P. Genomic regions associated to lipids and diterpenes contents slected during domestication and breeding of Coffea arabica. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 9., 2017, Foz de Iguaçu. Melhoramento de plantas: projetando o futuro. Maringá, PR: SBMP, 2017. p. 72| Biblioteca(s): Embrapa Café. |
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| Registros recuperados : 46 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Amazônia Oriental. Para informações adicionais entre em contato com cpatu.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Amazônia Oriental. |
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Data corrente: |
28/09/2022 |
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Data da última atualização: |
28/09/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 2 |
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Autoria: |
ABREU, V. A. C. de; ALVES, R. M.; SILVA, S. R.; FERRO, J. A.; DOMINGUES, D. S.; MIRANDA, V. F. O.; VARANI, A. M. |
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Afiliação: |
VINICIUS A. C. DE ABREU, UNIVERSIDADE FEDERAL DO PARÁ; RAFAEL MOYSES ALVES, CPATU; SAURA R. SILVA, UNIVERSIDADE ESTADUAL PAULISTA; JESUS A. FERRO, UNIVERSIDADE ESTADUAL PAULISTA; DOUGLAS S. DOMINGUES, ESCOLA SUPERIOR DE AGRICULTURA LUIZ DE QUEIROZ; VITOR F.O. MIRANDA, UNIVERSIDADE ESTADUAL PAULISTA; ALESSANDRO M. VARANI, UNIVERSIDADE ESTADUAL PAULISTA. |
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Título: |
Comparative analyses of Theobroma cacao and T. grandiflorum mitogenomes reveal conserved gene content embedded within complex and plastic structures. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Gene, v. 849, 146904, 2023. |
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DOI: |
https://doi.org/10.1016/j.gene.2022.146904 |
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Idioma: |
Inglês |
|
Conteúdo: |
Unlike the chloroplast genomes (ptDNA), the plant mitochondrial genomes (mtDNA) are much more plastic in structure and size but maintain a conserved and essential gene set related to oxidative phosphorylation. Moreover, the plant mitochondrial genes and mtDNA are good markers for phylogenetic, evolutive, and comparative analyses. The two most known species in Theobroma L. (Malvaceae s.l.) genus are T. cacao, and T. grandiflorum. Besides the economic value, both species also show considerable biotechnology potential due to their other derived products, thus, aggregating additional economic value for the agroindustry. Here, we assembled and compared the mtDNA of Theobroma cacao and T. grandiflorum to generate a new genomics resource and unravel evolutionary trends. Graph-based analyses revealed that both mtDNA exhibit multiple alternative arrangements, confirming the dynamism commonly observed in plant mtDNA. The disentangled assembly graph revealed potential predominant circular molecules. The master circle molecules span 543,794 bp for T. cacao and 501,598 bp for T. grandiflorum, showing 98.9% of average sequence identity. Both mtDNA contains the same set of 39 plant mitochondrial genes, commonly found in other rosid mitogenomes. The main features are a duplicated copy of atp4, the absence of rpl6, rps2, rps8, and rps11, and the presence of two chimeric open-reading frames. Moreover, we detected few ptDNA integrations mainly represented by tRNAs, and no viral sequences were detected. Phylogenomics analyses indicate Theobroma spp. are nested in Malvaceae family. The main mtDNA differences are related to distinct structural rearrangements and exclusive regions associated with relics of Transposable Elements, supporting the hypothesis of dynamic mitochondrial genome maintenance and divergent evolutionary paths and pressures after species differentiation. MenosUnlike the chloroplast genomes (ptDNA), the plant mitochondrial genomes (mtDNA) are much more plastic in structure and size but maintain a conserved and essential gene set related to oxidative phosphorylation. Moreover, the plant mitochondrial genes and mtDNA are good markers for phylogenetic, evolutive, and comparative analyses. The two most known species in Theobroma L. (Malvaceae s.l.) genus are T. cacao, and T. grandiflorum. Besides the economic value, both species also show considerable biotechnology potential due to their other derived products, thus, aggregating additional economic value for the agroindustry. Here, we assembled and compared the mtDNA of Theobroma cacao and T. grandiflorum to generate a new genomics resource and unravel evolutionary trends. Graph-based analyses revealed that both mtDNA exhibit multiple alternative arrangements, confirming the dynamism commonly observed in plant mtDNA. The disentangled assembly graph revealed potential predominant circular molecules. The master circle molecules span 543,794 bp for T. cacao and 501,598 bp for T. grandiflorum, showing 98.9% of average sequence identity. Both mtDNA contains the same set of 39 plant mitochondrial genes, commonly found in other rosid mitogenomes. The main features are a duplicated copy of atp4, the absence of rpl6, rps2, rps8, and rps11, and the presence of two chimeric open-reading frames. Moreover, we detected few ptDNA integrations mainly represented by tRNAs, and no viral sequences were ... Mostrar Tudo |
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Thesagro: |
Genoma; Horticultura; Malvaceae; Theobroma Cacao; Theobroma Grandiflorum. |
|
Categoria do assunto: |
G Melhoramento Genético |
|
Marc: |
LEADER 02708naa a2200265 a 4500
001 2146923
005 2022-09-28
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1016/j.gene.2022.146904$2DOI
100 1 $aABREU, V. A. C. de
245 $aComparative analyses of Theobroma cacao and T. grandiflorum mitogenomes reveal conserved gene content embedded within complex and plastic structures.$h[electronic resource]
260 $c2023
520 $aUnlike the chloroplast genomes (ptDNA), the plant mitochondrial genomes (mtDNA) are much more plastic in structure and size but maintain a conserved and essential gene set related to oxidative phosphorylation. Moreover, the plant mitochondrial genes and mtDNA are good markers for phylogenetic, evolutive, and comparative analyses. The two most known species in Theobroma L. (Malvaceae s.l.) genus are T. cacao, and T. grandiflorum. Besides the economic value, both species also show considerable biotechnology potential due to their other derived products, thus, aggregating additional economic value for the agroindustry. Here, we assembled and compared the mtDNA of Theobroma cacao and T. grandiflorum to generate a new genomics resource and unravel evolutionary trends. Graph-based analyses revealed that both mtDNA exhibit multiple alternative arrangements, confirming the dynamism commonly observed in plant mtDNA. The disentangled assembly graph revealed potential predominant circular molecules. The master circle molecules span 543,794 bp for T. cacao and 501,598 bp for T. grandiflorum, showing 98.9% of average sequence identity. Both mtDNA contains the same set of 39 plant mitochondrial genes, commonly found in other rosid mitogenomes. The main features are a duplicated copy of atp4, the absence of rpl6, rps2, rps8, and rps11, and the presence of two chimeric open-reading frames. Moreover, we detected few ptDNA integrations mainly represented by tRNAs, and no viral sequences were detected. Phylogenomics analyses indicate Theobroma spp. are nested in Malvaceae family. The main mtDNA differences are related to distinct structural rearrangements and exclusive regions associated with relics of Transposable Elements, supporting the hypothesis of dynamic mitochondrial genome maintenance and divergent evolutionary paths and pressures after species differentiation.
650 $aGenoma
650 $aHorticultura
650 $aMalvaceae
650 $aTheobroma Cacao
650 $aTheobroma Grandiflorum
700 1 $aALVES, R. M.
700 1 $aSILVA, S. R.
700 1 $aFERRO, J. A.
700 1 $aDOMINGUES, D. S.
700 1 $aMIRANDA, V. F. O.
700 1 $aVARANI, A. M.
773 $tGene$gv. 849, 146904, 2023.
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